Package: FuncDiv 1.0.0

FuncDiv: Compute Contributional Diversity Metrics

Compute alpha and beta contributional diversity metrics, which is intended for linking taxonomic and functional microbiome data. See 'GitHub' repository for the tutorial: <https://github.com/gavinmdouglas/FuncDiv/wiki>. Citation: Gavin M. Douglas, Sunu Kim, Morgan G. I. Langille, B. Jesse Shapiro (2023) <doi:10.1093/bioinformatics/btac809>.

Authors:Gavin Douglas [aut, cre]

FuncDiv_1.0.0.tar.gz
FuncDiv_1.0.0.zip(r-4.7)FuncDiv_1.0.0.zip(r-4.6)FuncDiv_1.0.0.zip(r-4.5)
FuncDiv_1.0.0.tgz(r-4.6-x86_64)FuncDiv_1.0.0.tgz(r-4.6-arm64)FuncDiv_1.0.0.tgz(r-4.5-x86_64)FuncDiv_1.0.0.tgz(r-4.5-arm64)
FuncDiv_1.0.0.tar.gz(r-4.7-arm64)FuncDiv_1.0.0.tar.gz(r-4.7-x86_64)FuncDiv_1.0.0.tar.gz(r-4.6-arm64)FuncDiv_1.0.0.tar.gz(r-4.6-x86_64)
FuncDiv_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
FuncDiv/json (API)

# Install 'FuncDiv' in R:
install.packages('FuncDiv', repos = c('https://gavinmdouglas.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/gavinmdouglas/funcdiv/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

3.74 score 11 stars 5 scripts 156 downloads 8 exports 11 dependencies

Last updated from:8601891ecc. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK270
linux-devel-x86_64OK267
source / vignettesOK189
linux-release-arm64OK226
linux-release-x86_64OK249
macos-release-arm64OK225
macos-release-x86_64OK357
macos-oldrel-arm64OK326
macos-oldrel-x86_64OK379
windows-develOK280
windows-releaseOK225
windows-oldrelOK242
wasm-releaseOK106

Exports:alpha_div_contribbeta_div_contribcompute_alpha_divcontrib_to_multitabfunc_abun_crossproductFuncDiv_alpha_metricsmultitab_to_contribsubset_func_and_abun_tables

Dependencies:apecollapsedata.tabledigestlatticenlmeparallelDistRcppRcppArmadilloRcppParallelRcppXPtrUtils