Package: POMS
Title: Phylogenetic Organization of Metagenomic Signals
Version: 1.0.1
Authors@R: 
    person(given = "Gavin",
           family = "Douglas",
           role = c("aut", "cre"),
           email = "gavinmdouglas@gmail.com")
Description: Code to identify functional enrichments across diverse
        taxa in phylogenetic tree, particularly where these taxa differ
        in abundance across samples in a non-random pattern. The
        motivation for this approach is to identify microbial functions
        encoded by diverse taxa that are at higher abundance in certain
        samples compared to others, which could indicate that such
        functions are broadly adaptive under certain conditions. See
        'GitHub' repository for tutorial and examples:
        <https://github.com/gavinmdouglas/POMS/wiki>. Citation: Gavin
        M. Douglas, Molly G. Hayes, Morgan G. I. Langille, Elhanan
        Borenstein (2022) <doi:10.1093/bioinformatics/btac655>.
License: GPL-3
Imports: ape (>= 3.0), data.table, MASS, parallel (>= 3.3.0), phangorn
        (>= 2.0.0), phylolm (>= 2.6), utils, XNomial (>= 1.0.4)
Suggests: testthat (>= 3.0.0)
Config/testthat/edition: 3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Config/pak/sysreqs: libglpk-dev libxml2-dev
Repository: https://gavinmdouglas.r-universe.dev
Date/Publication: 2022-12-13 14:40:29 UTC
RemoteUrl: https://github.com/gavinmdouglas/poms
RemoteRef: HEAD
RemoteSha: f1eca60b651275780e48cb5f2bd5b76884d6dfff
NeedsCompilation: no
Packaged: 2026-10-16 07:36:45 UTC; root
Author: Gavin Douglas [aut, cre]
Maintainer: Gavin Douglas <gavinmdouglas@gmail.com>
Depends: R (>= 3.5.0)